After a meeting led by CAR Prime Minister Nicolas Tiangaye at the Mahlamba Ndlopfu presidential residence in Pretoria at the weekend, Zuma said on Sunday a number of issues were clarified.
"We received the prime minister of the CAR as an envoy from the president currently leading that country. [Michel Djotodia, Seleka rebel leader] had indicated that he would want to send a delegation to come and see me," said Zuma.
"We are very happy with the message [brought by Tiangaye]. We have had a very good discussion with the prime minister. We think it [the Pretoria meeting] has helped to clarify certain things and also to deal with the relations between the two countries."
Zuma said South Africa recognised the CAR's transitional government based on the January 2013 agreement signed in Libreville, Gabon.
Part of the transitional roadmap endorsed by the regional Economic Community of Central African States bloc was the formation of a national transition council. That council subsequently elected Djotodia as interim president of the country.
"Once the forces that were fighting President Bozizé took over, the leader said the Constitution was suspended, as well as Parliament and the judiciary. That is the government we said we are not going to recognise, with everybody else," Zuma said.
"There was a regional meeting which changed the status of the [Djotodia] authority. We did not say there was anyone who could not be elected to the transitional authority. The Libreville agreement, which is legal, is what is operating now."
Bozizé appointed Tiangaye, a widely respected lawyer and human rights activist, as prime minister in January following the Libreville ceasefire agreement.
He kept his job when the Seleka rebels made the final push for Bangui, forcing François Bozizé into exile at the end of March.
Tiangaye is part of the transitional government meant to prepare for elections within 18 months.
On Sunday, Tiangaye said his trip sought to cement bilateral relations between South Africa and his country. Speaking in French, Tiangaye offered condolences for the deaths of 13 South African soldiers on March 23.
"The message I brought is a message of calm and peace. We would like to take that unfortunate incident as a page of history that we will now turn to open a new one," he said through a translator.
"We have accepted on behalf of South Africa the condolence message and the message which says we need to continue with the relations. I am sure as sister countries we are happy we've had this discussion … This could clarify many things that other people might not have known. We thank the prime minister and his delegation," Zuma said.
'A personalised relationship'
Tiangaye said it was regrettable there had been "a personalised relationship" between South Africa and Bozizé.
"We regret that the past relations with the former president [Bozizé] were more personalised, and we are now aiming at improving these relations to be more at a state level," he said.
"It was not the fault of President Zuma or the government of South Africa. It was because [former] president Bozizé was hiding the nature of the relationship between the two countries."
He said his visit to Pretoria, with a senior delegation from the strife-torn country, would mark the beginning of a new phase in the relationship.
"We are convinced we have now entered a new chapter and that the relationship will be more transparent to both countries. This is the message that I transmitted to President Zuma and the people of South Africa on behalf of the people of CAR," he said. – Sapa